Package: visPedigree
Type: Package
Title: Tidying, Analysis, and Fast Visualization of Animal and Plant
        Pedigrees
Version: 1.10.1
Authors@R: person("Sheng","Luan", email="luansheng@gmail.com", role = c("aut","cre"))
Description: Provides tools for the analysis and visualization of
        animal and plant pedigrees. Analytical methods include
        equivalent complete generations, generation intervals,
        effective population size (via inbreeding, coancestry, and
        demographic approaches), founder and ancestor contributions,
        partial inbreeding, genetic diversity indices, and additive
        (A), dominance (D), and epistatic (AA) relationship matrices.
        Core algorithms — ancestry tracing, topological sorting,
        inbreeding coefficients, and matrix construction — are
        implemented in C++ ('Rcpp', 'RcppArmadillo') and 'data.table',
        scaling to pedigrees with over one million individuals.
        Matrix-free pedigree traversals apply additive relationship
        matrices or their inverses to vectors and matrices without
        materializing dense square matrices. Pedigree graphs are
        rendered via 'igraph' with support for compact full-sib family
        display; relationship matrices can be visualized as heatmaps.
        Supports complex mating systems, including selfing and
        pedigrees in which the same individual can appear as both sire
        and dam.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.1.0)
Imports: data.table (>= 1.14.0), igraph (>= 1.3.0), Matrix, methods,
        Rcpp, lattice
LinkingTo: Rcpp, RcppArmadillo
Suggests: nadiv (>= 2.18.0), testthat (>= 3.0.0), knitr, rmarkdown,
        devtools, roxygen2, pkgdown
URL: https://github.com/luansheng/visPedigree,
        https://luansheng.github.io/visPedigree/
BugReports: https://github.com/luansheng/visPedigree/issues
VignetteBuilder: knitr
Config/Needs/website: rmarkdown
Config/testthat/edition: 3
RoxygenNote: 7.3.3
Repository: https://luansheng.r-universe.dev
Date/Publication: 2026-09-23 04:40:24 UTC
RemoteUrl: https://github.com/luansheng/vispedigree
RemoteRef: HEAD
RemoteSha: 2899405f033629114001894c8ad2c311840a88a6
NeedsCompilation: yes
Packaged: 2026-10-23 06:32:02 UTC; root
Author: Sheng Luan [aut, cre]
Maintainer: Sheng Luan <luansheng@gmail.com>